I have created the diffusion tensor image with the following codes, and everything went successfully. But when I check the tensor image with mrview, it looks weird (see below).
What may cause this?
# create a mask dwi2mask align.mif - | maskfilter - dilate dwi_mask.mif # create diffusion tensor dwi2tensor -mask dwi_mask.mif align.mif dt.mif
Note: align.mif is that conducted the DWI to TIw alignment.
Thankyou in advanced!