Hello experts, it’s been a while but I’m back and analyzing more data. The folks who manage our HPC resources set me up with a new shiny version of MRtrix3, and I am at the stage where I’m running dwifslpreproc
. Unlike with dwipreproc
, I am unable to specify where I want the -tempdir
to be and unable to name it. Since eddy_cuda
and eddy_openmp
tend to throw errors in my HPC setup, being able to tag -tempdir
with the subject ID has been extremely useful for debugging, and I even sometimes have success running eddy from within the tempdir directories (where running within the overall dwipreproc/dwifslpreproc
command fails). I can’t find any new flags in the dwifslpreproc -help
to set -tempdir,
am I missing something?
Thanks in advance for any advice! -Rachael