Beginner: Connectome pipeline (Updated)

Dear Elijah,

I was reading the post and I found it very interesting. I have a small doubt: In the third step of the structural processing, when you use tkregister to register T1 to DTI, how do you conserve the resolution? I mean if the DTI is 2x2x2 (for example) and the T1 1x1x1, the registered T1 should be also 2x2x2, am I correct? or there is something that I am missing…

Regards,

Manuel