For anyone interested, I have pushed out an update to my BIDS Apps script “
MRtrix3_connectome”, tagged as version
As previously, it can be utilised either within a Docker container (and consequently as a Singularity container following appropriate conversion), or the script itself can be executed as a standalone file as long as you have MRtrix3 version
3.0_RC3 installed and set your
PYTHONPATH environment variable as per the documentation.
While this application may be developed by yours truly, it is not an integrated part of MRtrix3; so please direct any queries / suggestions to me directly: either through private messaging on this forum, e-mail, or by posting directly to the GitHub issue list for the relevant repository.
Shameless self-promotion complete,