5ttgen waiitng for creation of new file

[Antonin_Skoch]

Dear @isAarya,

you may find useful looking at following threads discussing the same issue:

5ttgen stuck at first-L_accu_first.vtk

Hi all, I’m using 5ttgen fsl on a T1 to DWI registered image and it’s stuck on Waiting for creation of new file "first-L_Accu_first.vtk". I checked the first.logs with cat * . logs/*.e*: Cannot open volume first-L_Accu_corr for reading! Cannot open volume first-L_Accu_first for reading! Image Exception : #22 :: ERROR: Could not open image first_all_none_origsegs Aborted I checked the tmp folder and It seems first can not build first-L_accu_first.vtk from the beginning. All other first.vt…

5ttgen

Hello, I’m curious if someone could help me with an issue I’m having with 5ttgen, which seems to be related to this topic. It has been stuck at for nearly an entire day. What’s curious is that this doesn’t always happen, and all 5ttgen files will be created when it does work. The only difference between it not working right now vs times it has worked is that I did a more thorough skullstripping of the T1 before doing a rigid-body registration to the diffusion series. I can’t imagine this woul…

Antonin