dwi2mask creates mask with insufficient overage

[JMaller1]

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Dwi2mask: holes in mask images

I’m having success with a similar procedure. I perform bet2 on the meanb0 image post-eddy correction, then use the subsequent mask for dwibiascorrect. After this, I use dwi2mask on the biascorrected image. For high b-value date, It’s worthy to note that this procedure only works when using -fsl argument into dwibiascorrect. With ants correction: [image] Now FSL: [image]

Jerome