Hello,
When I run dwipreproc following the latest instruction on multiband (similar to HPC) DSI, I got an error (I used reconstructed nitfi images, instead of raw pre-reconstructed DICOM).
dwipreproc: [ERROR] Command failed: eddy --imain=dwi.nii --mask=mask.nii --acqp=eddy_config.txt --index=eddy_indices.txt --bvecs=bvecs --bvals=bvals --topup=field --out=dwi_post_eddy (dwipreproc:518)
the error.txt says:
eddy --imain=dwi.nii --mask=mask.nii --acqp=eddy_config.txt --index=eddy_indices.txt --bvecs=bvecs --bvals=bvals --topup=field --out=dwi_post_eddy
Image Exception : #3 :: Attempted to add images/ROIs of different sizes
Any suggestions? How do you preprocess multi-band DSI using mrtrix?