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T1 and DWI are already aligned - should I skip registration and transform steps in MRtrix pipeline?
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6
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48
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July 11, 2025
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Whole brain fibers shorter than expected
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5
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56
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July 10, 2025
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Inverted dwi_denoise image
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1
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22
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July 9, 2025
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CSF voxel selection in dwi2response dhollander skips ventricles, expected?
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2
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27
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July 2, 2025
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Clarification on tckmap TDI contrast behavior
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0
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17
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June 30, 2025
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Installing MRtrix3 with conda
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1
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67
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June 30, 2025
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Questions about FOD abnormalities and bias correction in single-shell FBA pipeline
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2
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31
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June 29, 2025
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Dwifslpreproc [WARNING] 0 (15)
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0
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24
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June 25, 2025
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FoVs are different
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0
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13
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June 25, 2025
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Conda install failing in recent GitHub actions
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1
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42
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June 22, 2025
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Label2mesh error
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0
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8
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June 19, 2025
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Dilating of brain mask and some other general queries
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15
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5996
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June 19, 2025
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Using protocol-specific response functions and templates for FBA
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1
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20
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June 16, 2025
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Which FOD file to use for TractSeg in subject space
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1
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40
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June 16, 2025
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Streamlines not reaching into posterior corpus callosum
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11
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102
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June 16, 2025
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Trouble Running dwifslpreproc with Custom Phase-Encoding Directions!
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0
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14
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June 16, 2025
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How do the compute intensive algorithms scale with the number of CPUs?
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0
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10
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June 15, 2025
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How to incorporate ACT framework when including small brainstem substructures?
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1
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39
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June 12, 2025
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How does tckgen track a fiber terminates at a certain ROI
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2
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20
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June 12, 2025
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Eddy/topup on denoised data
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2
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67
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June 12, 2025
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MRTrix dwibiascorrect error
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1
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23
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June 12, 2025
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ERROR with run fixelconnectivity
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0
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17
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June 7, 2025
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Eddy_cuda fails despite sufficient mask voxel count
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1
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48
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June 6, 2025
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Synb0 output in dwifslpreproc
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1
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26
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June 5, 2025
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Order of preprocessing steps with already eddy corrected data
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1
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57
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June 5, 2025
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Eddy introduces motion
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0
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10
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June 4, 2025
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Clarification on -seed_dynamic: Is a WM mask required when not using ACT?
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0
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10
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June 4, 2025
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How to practically apply SIFT2 mu to structural connectomes?
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0
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35
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June 3, 2025
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Issue : dwibiascorrect ants crashing terminal (moved from General Discussion to Development)
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0
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9
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June 3, 2025
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Erroneous L streamlines for R RACG to MOFG tracts
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0
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13
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June 2, 2025
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