MRtrix3 Community

Topic	Replies	Views	Activity
Problem with registering AAL parcellated image with DTI tract file	21	595	February 5, 2024
A problem of dwifslpreproc installation , anaconda , fsl	19	631	September 25, 2023
MRtrix3Tissue installation error	15	462	February 2, 2024
Creating a Structural Network with a Volmetric atlas	11	309	March 6, 2024
Brain Stem segmentation/visualization for nuclei and tracts	10	190	April 24, 2024
Thresholding ROI masks for DTI analysis	9	202	August 3, 2023
Urgent Dwifslpreproc help	10	156	March 25, 2024
Best pipeline to compute FA give dwi.mif	10	167	April 16, 2024
Next MRtrix3 Workshop will be held in Taiwan, 1-4 July 2024! Announcements workshop Hi everyone, We are pleased to announce that we will be hosting our sixth official MRtrix3 workshop in July at Chang Gung University in Taiwan. date & time: Monday 1 till Thursday 4 July 2024, 9am – 5pm. location: C…	2	1679	January 20, 2024
Read mif files into python	1	285	June 9, 2023
Registrations for the 6th MRtrix Workshop are now live! Announcements workshop	0	199	March 1, 2024
Handling outliers in SIFT proportionality coefficient mu tractography	1	248	May 23, 2023
Connectomes convergence in the number of fibers	5	255	October 26, 2023
Use of inverse warp file created with ANTs within MRtrix3	6	492	August 30, 2023
Calculate FA map using multishell data preprocessing	1	280	August 2, 2023
Single-Shell (+B0) 3-Tissue CSD	5	445	June 6, 2023
Eddy_openmp error	3	400	June 26, 2023
Multicenter fixel based analyses: is this possible?	7	334	November 2, 2023
Error during Eddy current correction	0	222	June 13, 2023
Mrview error on ubuntu22.04 installation , error , linux , mrview	0	224	August 25, 2023
Poor registration issue preprocessing	8	241	November 20, 2023
Combining two DTI scans for tractography tractography	5	358	October 18, 2023
Dwifslpreproc - Eddy failed with message	8	340	December 21, 2023
Reading Images Failure with dwifslpreproc	0	178	August 21, 2023
When going from one-tailed to two-tailed stats in connectomestats, do I need to adjust the threshold? connectomics	0	171	June 16, 2023
Question about the whole-brain FBA: how to identify which tracts are the significant fixels belong to?	4	264	May 30, 2023
Diffusion Kurtosis Imaging analysis Development	4	451	July 16, 2023
dStripe module for MRtrix error , preprocessing	0	152	November 17, 2023
single shell data: ss3t_csd_beta1 or msmt_csd	0	145	November 10, 2023
Opinion on dwigradcheck	0	163	September 22, 2023
Dwifslpreproc Fails with EDDY::: Eddy failed with message Error error , preprocessing	3	459	September 22, 2023
Seeking Guidance on Generating a Global Value for FA Map using tckmap	0	139	July 1, 2023
TBSS healthy vs effected study	0	126	July 10, 2023
Unknown format for image in .nii format [Error] Development	3	219	June 19, 2023
BATMAN tutorial step 2.4 – zsh: command not found: dwipreproc	7	294	April 18, 2024
Can data with different imaging protocols be combined and used together?	0	135	December 14, 2023
FD, FC and FDC values	2	287	September 26, 2023
Issue Converting Eddy-Corrected Nifti Files to MIF Format Using mrconvert	0	121	August 10, 2023
CSD testing (Investigating the prevalence of complex fiber configurations in white matter tissue with diffusion magnetic resonance imaging)	3	209	November 13, 2023
Combining two dwi images with b800 and b2000	8	253	November 15, 2023
I would like to perform fba (fixel-based analysis), but instead of calculating the group averaged response function, I computed the fod (fiber orientation distribution) separately for each individual. What issues can arise from this approach?	0	140	November 1, 2023
Connectome node visualization, - mesh - colour	0	125	June 19, 2023
How to perform one-way anova with fixelcfestats? fba	2	222	September 16, 2023
mrgrid does not exist in mrtrix3 on HPC	2	232	September 13, 2023
Upsampling before degibs?	0	113	June 23, 2023
Coregistrtaion of Freesurfer output and diffusion image	5	261	February 16, 2024
Modify nifti transformation	0	112	November 10, 2023
Local connectivity with MRtrix	2	259	November 6, 2023
Install Mrtrix3 via conda successufly but fail to open in Ubuntu 22.04.3 error , installation , mrview	3	294	December 19, 2023
Bug with MRview on MacOS Sonoma macos , error , tractography , mrview	2	337	November 12, 2023

Problem with registering AAL parcellated image with DTI tract file

21

595

February 5, 2024

A problem of dwifslpreproc

installation , anaconda , fsl

19

631

September 25, 2023

MRtrix3Tissue installation error

15

462

February 2, 2024

Creating a Structural Network with a Volmetric atlas

11

309

March 6, 2024

Brain Stem segmentation/visualization for nuclei and tracts

10

190

April 24, 2024

Thresholding ROI masks for DTI analysis

9

202

August 3, 2023

Urgent Dwifslpreproc help

10

156

March 25, 2024

Best pipeline to compute FA give dwi.mif

10

167

April 16, 2024

Next MRtrix3 Workshop will be held in Taiwan, 1-4 July 2024!

Announcements

workshop

Hi everyone, We are pleased to announce that we will be hosting our sixth official MRtrix3 workshop in July at Chang Gung University in Taiwan. date & time: Monday 1 till Thursday 4 July 2024, 9am – 5pm. location: C…